Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
Coch_0775KEGG: gfo:GFO_2979 secreted protein containing tetratricopeptide repeats. (447 aa)    
Predicted Functional Partners:
Coch_0774
PFAM: protein of unknown function DUF1239; KEGG: gfo:GFO_2978 hypothetical protein.
 
     0.921
Coch_0776
KEGG: gfo:GFO_2980 conserved hypothetical protein, secreted.
 
     0.861
coaX
Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.794
Coch_0982
KEGG: gfo:GFO_3292 hypothetical protein.
 
    0.791
Coch_0522
KEGG: gfo:GFO_1825 hypothetical protein.
  
     0.774
Coch_0189
TIGRFAM: TonB family protein; KEGG: gfo:GFO_0186 hypothetical protein.
  
     0.771
Coch_2190
KEGG: fps:FP1047 hypothetical protein.
 
    0.771
Coch_0261
KEGG: gfo:GFO_0089 membrane protein.
  
     0.765
Coch_0260
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gfo:GFO_0090 hypothetical protein.
  
     0.763
Coch_0259
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gfo:GFO_0091 hypothetical protein.
  
     0.759
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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