Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0780Virulence protein-like protein; KEGG: pvi:Cvib_1132 hypothetical protein. (108 aa)    
Predicted Functional Partners:
Coch_0779
PFAM: filamentation induced by cAMP protein Fic; KEGG: hpa:HPAG1_p002 hypothetical protein.
       0.778
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.642
Coch_0588
PFAM: Eco57I restriction endonuclease; N-6 DNA methylase; KEGG: hin:HI0513 modification methylase.
  
    0.637
Coch_0778
PFAM: protein of unknown function DUF214; KEGG: fps:FP0239 ABC transporter permease.
       0.550
Coch_0776
KEGG: gfo:GFO_2980 conserved hypothetical protein, secreted.
  
    0.423
coaX
Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.419
Coch_0774
PFAM: protein of unknown function DUF1239; KEGG: gfo:GFO_2978 hypothetical protein.
       0.407
Coch_0775
KEGG: gfo:GFO_2979 secreted protein containing tetratricopeptide repeats.
       0.407
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.