Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0784PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pgi:PG0185 RagA protein. (1013 aa)    
Predicted Functional Partners:
Coch_0785
PFAM: RagB/SusD domain protein; KEGG: bth:BT_0207 hypothetical protein.
 
     0.939
Coch_0268
PFAM: RagB/SusD domain protein; KEGG: bth:BT_0207 hypothetical protein.
  
     0.773
Coch_1344
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1732 SusD/RagB family protein containing tetratricopeptide repeats.
  
     0.717
Coch_1472
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1712 SusD/RagB family protein.
  
     0.711
Coch_0536
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_2446 hypothetical protein.
  
     0.703
Coch_0199
PFAM: RagB/SusD domain protein; KEGG: bfs:BF3257 hypothetical protein.
  
     0.662
Coch_0796
KEGG: bvu:BVU_0280 hypothetical protein.
  
     0.647
Coch_0667
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_3801 RagB/SusD domain-containing protein.
  
     0.634
Coch_1122
PFAM: RagB/SusD domain protein; KEGG: bth:BT_3568 hypothetical protein.
  
     0.602
Coch_1019
PFAM: RagB/SusD domain protein; KEGG: bth:BT_2821 hypothetical protein.
  
     0.586
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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