Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0785PFAM: RagB/SusD domain protein; KEGG: bth:BT_0207 hypothetical protein. (511 aa)    
Predicted Functional Partners:
Coch_0784
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pgi:PG0185 RagA protein.
 
     0.939
Coch_0537
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_1920 hypothetical protein.
 
 
   0.805
Coch_1473
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: gfo:GFO_1711 TonB-dependent outer membrane receptor.
 
 
   0.800
Coch_0932
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3090 hypothetical protein.
 
 
   0.797
Coch_0269
PFAM: TonB-dependent receptor plug; KEGG: pgi:PG0185 RagA protein.
  
     0.773
Coch_0198
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF3437 hypothetical protein.
 
 
   0.731
Coch_0628
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_1558 hypothetical protein.
 
 
   0.719
Coch_1343
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3332 hypothetical protein.
  
     0.717
Coch_0667
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_3801 RagB/SusD domain-containing protein.
  
     0.710
Coch_1022
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_2818 hypothetical protein.
  
 
   0.710
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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