Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0796KEGG: bvu:BVU_0280 hypothetical protein. (772 aa)    
Predicted Functional Partners:
Coch_0797
Hypothetical protein.
       0.732
Coch_1739
KEGG: bth:BT_4200 hypothetical protein.
  
   0.711
Coch_0269
PFAM: TonB-dependent receptor plug; KEGG: pgi:PG0185 RagA protein.
  
     0.668
Coch_2172
KEGG: gfo:GFO_3478 hypothetical protein.
  
     0.664
Coch_0784
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pgi:PG0185 RagA protein.
  
     0.647
Coch_1343
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3332 hypothetical protein.
  
     0.644
Coch_1121
PFAM: TonB-dependent receptor plug; KEGG: bth:BT_3569 hypothetical protein.
  
     0.624
Coch_1473
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: gfo:GFO_1711 TonB-dependent outer membrane receptor.
  
    0.615
Coch_0196
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfs:BF0871 hypothetical protein.
  
     0.565
Coch_0607
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: gfo:GFO_0106 uroporphyrinogen-III synthase.
  
     0.496
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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