STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0803PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: cja:CJA_2990 putative lipoprotein. (221 aa)    
Predicted Functional Partners:
Coch_1186
SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_2813 O-antigen polymerase.
 
     0.597
Coch_1787
KEGG: asa:ASA_1832 hypothetical protein.
  
     0.591
Coch_0802
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pdi:BDI_0229 thiol:disulfide interchange protein.
       0.580
Coch_0349
Hypothetical protein; KEGG: pdi:BDI_3271 clostripain-related protein.
  
     0.520
Coch_1587
KEGG: gfo:GFO_0053 conserved hypothetical protein, secreted.
  
     0.492
Coch_1785
KEGG: hypothetical protein; K08900 mitochondrial chaperone BCS1.
  
     0.470
Coch_1230
PFAM: Sporulation domain protein; KEGG: fjo:Fjoh_0996 sporulation domain-containing protein.
  
   
 0.453
Coch_1430
KEGG: gfo:GFO_2924 hypothetical protein.
  
 
   0.451
Coch_1513
KEGG: fjo:Fjoh_1476 hypothetical protein.
  
     0.445
Coch_1588
Hypothetical protein; KEGG: gfo:GFO_1837 conserved hypothetical protein, secreted.
  
     0.445
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.