STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0806KEGG: gfo:GFO_3012 gliding motility protein GldO. (299 aa)    
Predicted Functional Partners:
Coch_0809
PFAM: protein of unknown function DUF323; KEGG: gfo:GFO_3015 gliding motility protein GldK.
 
 
 
 0.979
Coch_0807
KEGG: gfo:GFO_3013 gliding motility protein GldM.
 
   
 0.957
Coch_0808
KEGG: gfo:GFO_3014 gliding motility protein GldL.
 
   
 0.878
Coch_0756
PFAM: protein of unknown function DUF323; KEGG: gfo:GFO_2892 gliding motility protein GldJ.
 
 
 
 0.874
Coch_0324
Hypothetical protein; KEGG: gfo:GFO_1901 conserved hypothetical protein, secreted.
  
     0.767
Coch_1853
KEGG: gfo:GFO_2286 hypothetical protein.
  
     0.761
Coch_2183
KEGG: fps:FP2359 hypothetical protein.
  
     0.738
Coch_1042
KEGG: gfo:GFO_3290 secreted peptidase, family M23.
  
     0.736
Coch_1477
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: fps:FP0042 uroporphyrinogen-III synthase.
 
     0.729
Coch_1748
KEGG: fps:FP0326 PorT protein.
 
   
 0.729
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.