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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0807KEGG: gfo:GFO_3013 gliding motility protein GldM. (526 aa)    
Predicted Functional Partners:
Coch_0808
KEGG: gfo:GFO_3014 gliding motility protein GldL.
 
 
 
 0.999
Coch_0806
KEGG: gfo:GFO_3012 gliding motility protein GldO.
 
   
 0.983
Coch_0809
PFAM: protein of unknown function DUF323; KEGG: gfo:GFO_3015 gliding motility protein GldK.
 
   
 0.957
Coch_2029
SMART: Tetratricopeptide domain protein; KEGG: gfo:GFO_3274 hypothetical protein.
  
   
 0.867
Coch_1633
Protein involved in gliding motility SprA; KEGG: fjo:Fjoh_1653 hypothetical protein.
  
   
 0.864
Coch_1748
KEGG: fps:FP0326 PorT protein.
 
   
 0.843
Coch_0756
PFAM: protein of unknown function DUF323; KEGG: gfo:GFO_2892 gliding motility protein GldJ.
 
   
 0.837
Coch_1064
KEGG: gfo:GFO_2782 gliding motility protein GldB.
  
   
 0.822
Coch_1855
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: gfo:GFO_0787 gliding motility protein GldI.
  
   
 0.790
Coch_1475
KEGG: gfo:GFO_3242 gliding motility protein GldH.
  
   
 0.777
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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