Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0820KEGG: chu:CHU_0286 hypothetical protein. (149 aa)    
Predicted Functional Partners:
Coch_0188
PFAM: VanZ family protein; KEGG: fjo:Fjoh_1655 hypothetical protein.
  
     0.692
Coch_0004
KEGG: mxa:MXAN_3576 hypothetical protein.
  
     0.645
Coch_1824
Hypothetical protein; KEGG: afw:Anae109_2404 acyltransferase family protein.
  
     0.620
Coch_0203
TIGRFAM: conserved repeat domain protein; KEGG: fjo:Fjoh_0979 hypothetical protein.
  
     0.617
Coch_0821
KEGG: fjo:Fjoh_0653 hypothetical protein.
       0.598
Coch_0822
TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: uue:UUR10_0587 DNA-cytosine methyltransferase.
       0.598
Coch_0798
TIGRFAM: TonB family protein; KEGG: bfs:BF3767 hypothetical protein.
  
     0.547
Coch_1033
KEGG: fjo:Fjoh_0978 hypothetical protein.
  
     0.528
Coch_0512
Hypothetical protein; KEGG: gfo:GFO_0898 conserved hypothetical protein, secreted.
  
     0.497
Coch_1447
PFAM: Sporulation domain protein; KEGG: fps:FP0015 putative cell surface protein precursor SprD.
  
     0.448
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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