Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0834PFAM: outer membrane chaperone Skp (OmpH); KEGG: gfo:GFO_3297 outer membrane protein (OmpH- like). (170 aa)    
Predicted Functional Partners:
Coch_1033
KEGG: fjo:Fjoh_0978 hypothetical protein.
  
     0.744
Coch_0203
TIGRFAM: conserved repeat domain protein; KEGG: fjo:Fjoh_0979 hypothetical protein.
  
     0.719
Coch_0077
KEGG: fjo:Fjoh_2443 hypothetical protein.
  
     0.700
Coch_0452
PFAM: surface antigen (D15); KEGG: gfo:GFO_0385 conserved hypothetical protein, secreted.
 
  
 0.661
Coch_1960
KEGG: fjo:Fjoh_0103 hypothetical protein.
  
     0.653
Coch_0609
KEGG: fjo:Fjoh_0552 hypothetical protein.
  
     0.651
Coch_1551
KEGG: fjo:Fjoh_0265 hypothetical protein.
  
     0.625
Coch_1877
KEGG: gfo:GFO_3081 hypothetical protein.
  
     0.623
Coch_0790
KEGG: gfo:GFO_1877 hypothetical protein.
  
     0.613
Coch_1920
PFAM: polysaccharide biosynthesis protein; KEGG: fjo:Fjoh_2426 polysaccharide biosynthesis protein.
  
     0.608
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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