Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0835PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: fps:FP0004 SAM-dependent methyltransferase. (273 aa)    
Predicted Functional Partners:
Coch_0836
KEGG: fps:FP1958 hypothetical protein.
       0.509
Coch_0834
PFAM: outer membrane chaperone Skp (OmpH); KEGG: gfo:GFO_3297 outer membrane protein (OmpH- like).
       0.461
Coch_0306
PFAM: UbiA prenyltransferase; KEGG: gfo:GFO_3628 prenyltransferase family protein.
 
 
 0.419
Coch_0920
PFAM: FAD dependent oxidoreductase; KEGG: fjo:Fjoh_1858 FAD dependent oxidoreductase.
  
 
 
 0.405
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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