Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0836KEGG: fps:FP1958 hypothetical protein. (110 aa)    
Predicted Functional Partners:
Coch_1635
KEGG: fps:FP1953 hypothetical protein.
  
     0.704
Coch_0834
PFAM: outer membrane chaperone Skp (OmpH); KEGG: gfo:GFO_3297 outer membrane protein (OmpH- like).
 
     0.583
Coch_0835
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: fps:FP0004 SAM-dependent methyltransferase.
       0.509
Coch_0837
Hypothetical protein.
       0.506
Coch_0838
PFAM: KWG Leptospira repeat protein; KEGG: chu:CHU_2188 hypothetical protein.
       0.469
Coch_0077
KEGG: fjo:Fjoh_2443 hypothetical protein.
  
     0.432
Coch_1355
KEGG: fjo:Fjoh_1692 hypothetical protein.
  
     0.431
Coch_2089
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: gfo:GFO_1008 phospholipid/glycerol acyltransferase.
  
     0.415
Coch_1843
KEGG: gfo:GFO_0234 conserved hypothetical protein, secreted.
 
     0.409
Coch_2144
PFAM: peptidase S41; SMART: peptidase S41; KEGG: gfo:GFO_1839 secreted peptidase, family S41.
  
     0.403
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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