Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0868Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: pdi:BDI_0844 hypothetical protein. (244 aa)    
Predicted Functional Partners:
Coch_0867
Hypothetical protein.
       0.741
Coch_0866
Hypothetical protein.
       0.648
Coch_0869
Hypothetical protein.
       0.565
Coch_0893
PFAM: VRR-NUC domain protein; KEGG: cbk:CLL_A2280 VRR-NUC domain protein.
  
     0.537
Coch_0081
PFAM: peptidase S51 dipeptidase E; KEGG: fjo:Fjoh_1768 peptidase E; Belongs to the peptidase S51 family.
  
     0.423
Coch_0016
Exo-alpha-sialidase; KEGG: bvu:BVU_4143 sialidase.
   
    0.403
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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