Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0879PFAM: phage antirepressor protein; AntA/AntB antirepressor domain protein; KEGG: spb:M28_Spy1280 phage antirepressor protein. (257 aa)    
Predicted Functional Partners:
Coch_0878
Hypothetical protein.
       0.705
Coch_0881
KEGG: abn:AB57_1247 hypothetical protein.
  
  
 0.595
Coch_0880
PFAM: DNA methylase N-4/N-6 domain protein; SMART: DEAD-like helicases; KEGG: aav:Aave_1746 DNA methylase N-4/N-6 domain protein.
       0.513
Coch_0877
KEGG: gfo:GFO_3043 hypothetical protein.
  
    0.447
Coch_0883
KEGG: bfr:BF1349 site-specific DNA- methyltransferase (cytosine-specific); TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase.
       0.442
Coch_0403
TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: fps:FP2249 RNA polymerase sigma-54 factor RpoN.
   
    0.406
Coch_0885
KEGG: pdi:BDI_0866 putative prophage Lp2 protein 26.
       0.406
Coch_0655
Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: chu:CHU_1881 transcriptional regulator.
  
  
 0.400
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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