Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0883KEGG: bfr:BF1349 site-specific DNA- methyltransferase (cytosine-specific); TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase. (389 aa)    
Predicted Functional Partners:
Coch_0822
TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: uue:UUR10_0587 DNA-cytosine methyltransferase.
  
  
 
0.927
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
    
 0.915
Coch_2188
Adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
    
  0.901
Coch_0885
KEGG: pdi:BDI_0866 putative prophage Lp2 protein 26.
  
    0.800
Coch_0881
KEGG: abn:AB57_1247 hypothetical protein.
  
  
 0.798
Coch_0882
KEGG: hypothetical protein.
       0.773
Coch_0884
Hypothetical protein.
       0.773
Coch_0886
KEGG: sag:SAG1867 hypothetical protein.
       0.773
Coch_0887
Hypothetical protein.
       0.773
Coch_0880
PFAM: DNA methylase N-4/N-6 domain protein; SMART: DEAD-like helicases; KEGG: aav:Aave_1746 DNA methylase N-4/N-6 domain protein.
 
     0.629
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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