Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0897Hypothetical protein. (186 aa)    
Predicted Functional Partners:
Coch_0895
Hypothetical protein.
       0.773
Coch_0896
Hypothetical protein; KEGG: gfo:GFO_2450 phage terminase large subunit.
       0.773
Coch_0898
Hypothetical protein.
       0.773
Coch_0899
Hypothetical protein.
       0.773
Coch_0900
KEGG: aav:Aave_2893 hypothetical protein.
       0.773
Coch_0901
Hypothetical protein.
       0.773
Coch_0902
KEGG: hypothetical protein.
       0.773
Coch_0903
Chromosome segregation ATPase-like protein; KEGG: wu:fc12e10; wu:fc12e10.
       0.773
Coch_0904
Hypothetical protein.
       0.773
Coch_0905
Hypothetical protein.
       0.773
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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