Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0909KEGG: bth:BT_3742 hypothetical protein. (646 aa)    
Predicted Functional Partners:
Coch_0226
PFAM: RagB/SusD domain protein; KEGG: bth:BT_1762 hypothetical protein.
  
 
   0.688
Coch_1186
SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_2813 O-antigen polymerase.
 
   
 0.668
Coch_0907
KEGG: pmu:PM1894 hypothetical protein.
       0.658
Coch_0908
PFAM: protein of unknown function DUF1212; KEGG: bth:BT_0975 putative integral membrane protein.
       0.658
Coch_0227
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_1763 hypothetical protein.
  
     0.654
Coch_1653
KEGG: fjo:Fjoh_1769 hypothetical protein.
  
 
   0.623
Coch_0766
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bfs:BF2697 putative exported TonB-dependent receptor protein.
  
 
   0.608
Coch_0906
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.606
Coch_1336
PFAM: Hyalin; KEGG: fjo:Fjoh_0979 hypothetical protein.
  
 
   0.596
Coch_1097
KEGG: bth:BT_3046 hypothetical protein.
  
     0.585
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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