Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0914PFAM: sodium:dicarboxylate symporter; KEGG: bfs:BF1918 putative transmembrane symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (400 aa)    
Predicted Functional Partners:
Coch_0915
Hypothetical protein.
       0.773
Coch_0916
KEGG: chu:CHU_0673 lipoprotein transmembrane protein.
       0.510
Coch_0913
PFAM: filamentation induced by cAMP protein Fic; KEGG: bfs:BF1356 cell division protein.
       0.508
Coch_0765
Malate dehydrogenase (oxaloacetate- decarboxylating) (NADP(+)); PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: fjo:Fjoh_1651 malic enzyme; phosphate acetyltransferase.
  
  
 0.481
Coch_0950
TIGRFAM: branched-chain amino acid transport system II carrier protein; PFAM: branched-chain amino acid transport system II carrier protein; KEGG: cbb:CLD_3758 branched-chain amino acid transport system II carrier protein.
  
   
 0.471
Coch_1310
TIGRFAM: branched-chain amino acid transport system II carrier protein; PFAM: branched-chain amino acid transport system II carrier protein; KEGG: cno:NT01CX_1664 branched-chain amino acid transport system II carrier protein.
  
   
 0.459
Coch_0220
Two component transcriptional regulator, AraC family; PFAM: response regulator receiver; periplasmic binding protein/LacI transcriptional regulator; ATP- binding region ATPase domain protein; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: bvu:BVU_1666 putative two-component system sensor histidine kinase/response regulator, hybrid.
   
  
 0.458
Coch_0991
PFAM: Na+/H+ antiporter NhaC; KEGG: fnu:FN1420 Na+/H+ antiporter NhaC.
 
   
 0.441
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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