Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0920PFAM: FAD dependent oxidoreductase; KEGG: fjo:Fjoh_1858 FAD dependent oxidoreductase. (350 aa)    
Predicted Functional Partners:
Coch_0921
PFAM: MgtC/SapB transporter; KEGG: fnu:FN0215 MgtC/SapB family membrane protein.
       0.757
Coch_2077
L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ccv:CCV52592_0468 L-lactate dehydrogenase (cytochrome).
   
 
 0.539
Coch_1651
PFAM: NUDIX hydrolase; KEGG: fjo:Fjoh_2605 NUDIX hydrolase.
 
 
 0.509
Coch_1769
KEGG: gfo:GFO_3422 hypothetical protein.
  
     0.452
Coch_1425
KEGG: gfo:GFO_0161 iron-sulfur binding oxidoreductase.
 
   
 0.449
Coch_0519
PFAM: alpha/beta hydrolase fold; KEGG: gfo:GFO_0218 alpha/beta fold hydrolase.
  
 
 0.436
Coch_1945
KEGG: gfo:GFO_1913 gliding motility protein GldG.
 
     0.429
Coch_1116
KEGG: fjo:Fjoh_1694 CBS domain-containing protein.
  
     0.418
Coch_0034
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.416
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.407
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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