Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0930KEGG: bth:BT_3088 hypothetical protein. (479 aa)    
Predicted Functional Partners:
Coch_0931
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_4433 RagB/SusD domain-containing protein.
 
   0.895
Coch_0929
KEGG: fjo:Fjoh_4431 hypothetical protein.
 
 
 
 0.889
Coch_0932
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3090 hypothetical protein.
 
    0.787
Coch_1123
Hypothetical protein; KEGG: shn:Shewana3_2086 beta-xylosidase-like protein.
  
     0.569
Coch_0629
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_2139 SusD/RagB family protein.
 
  
 0.516
Coch_1122
PFAM: RagB/SusD domain protein; KEGG: bth:BT_3568 hypothetical protein.
  
   0.444
Coch_0927
KEGG: fjo:Fjoh_3390 hypothetical protein.
 
     0.418
Coch_1393
PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: fjo:Fjoh_4428 glycoside hydrolase family protein.
 
     0.416
Coch_1472
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1712 SusD/RagB family protein.
  
   0.402
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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