STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0932PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3090 hypothetical protein. (1012 aa)    
Predicted Functional Partners:
Coch_0931
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_4433 RagB/SusD domain-containing protein.
 
 
   0.911
Coch_0199
PFAM: RagB/SusD domain protein; KEGG: bfs:BF3257 hypothetical protein.
  
 
   0.837
Coch_1472
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1712 SusD/RagB family protein.
 
 
   0.832
Coch_1122
PFAM: RagB/SusD domain protein; KEGG: bth:BT_3568 hypothetical protein.
 
 
   0.816
Coch_1019
PFAM: RagB/SusD domain protein; KEGG: bth:BT_2821 hypothetical protein.
  
 
   0.811
Coch_0444
PFAM: RagB/SusD domain protein; KEGG: bth:BT_3311 hypothetical protein.
 
 
   0.810
Coch_0268
PFAM: RagB/SusD domain protein; KEGG: bth:BT_0207 hypothetical protein.
 
 
   0.805
Coch_0197
PFAM: RagB/SusD domain protein; KEGG: bfr:BF0953 hypothetical protein.
  
 
   0.801
Coch_0785
PFAM: RagB/SusD domain protein; KEGG: bth:BT_0207 hypothetical protein.
 
 
   0.797
Coch_0226
PFAM: RagB/SusD domain protein; KEGG: bth:BT_1762 hypothetical protein.
 
 
   0.793
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.