Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0933PFAM: cyclic nucleotide-binding; KEGG: pdi:BDI_2950 hypothetical protein. (175 aa)    
Predicted Functional Partners:
Coch_0934
Hypothetical protein.
       0.773
Coch_0935
PFAM: cyclic nucleotide-binding; KEGG: fjo:Fjoh_4064 cyclic nucleotide-binding protein.
 
    
0.679
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.543
Coch_0353
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.530
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.519
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.492
Coch_1501
KEGG: gfo:GFO_0649 hypothetical protein.
    
   0.482
Coch_0655
Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: chu:CHU_1881 transcriptional regulator.
  
  
 0.468
Coch_0002
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: fjo:Fjoh_4767 LysR family transcriptional regulator.
   
 
 0.435
Coch_2105
PFAM: Transketolase domain protein; dehydrogenase E1 component; Transketolase central region; KEGG: fps:FP0719 putative pyruvate/branched-chain alpha-keto acid dehydrogenase (E1) component, alpha and beta subunits.
 
 
 
 0.422
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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