Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0936KEGG: gfo:GFO_3124 conserved hypothetical protein, secreted. (299 aa)    
Predicted Functional Partners:
Coch_0937
PFAM: protein of unknown function DUF59; KEGG: gfo:GFO_3126 protein containing DUF59.
       0.733
Coch_0264
KEGG: fjo:Fjoh_1279 phospholipid/glycerol acyltransferase.
  
     0.578
Coch_0833
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: gfo:GFO_3311 LysE type amino acid translocator.
  
     0.554
Coch_1810
TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: gfo:GFO_0802 signal peptidase I; Belongs to the peptidase S26 family.
  
     0.540
Coch_0938
PFAM: Fe-S metabolism associated SufE; KEGG: gfo:GFO_3127 protein containing Fe-S metabolism associated domain.
       0.507
Coch_1341
PFAM: protein of unknown function DUF541; KEGG: gfo:GFO_2053 secreted protein containing DUF541.
  
     0.495
Coch_0482
PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: gfo:GFO_3199 transmembrane peptidase, family M50.
  
     0.466
Coch_0537
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_1920 hypothetical protein.
  
     0.460
Coch_1852
KEGG: fjo:Fjoh_4924 hypothetical protein.
  
    0.437
Coch_0935
PFAM: cyclic nucleotide-binding; KEGG: fjo:Fjoh_4064 cyclic nucleotide-binding protein.
       0.423
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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