Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0943KEGG: pdi:BDI_2049 hypothetical protein. (528 aa)    
Predicted Functional Partners:
Coch_1502
TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: fjo:Fjoh_3469 DNA uptake lipoprotein-like protein.
   
 
 0.867
Coch_0452
PFAM: surface antigen (D15); KEGG: gfo:GFO_0385 conserved hypothetical protein, secreted.
  
 
 0.722
Coch_1357
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: fps:FP2096 outer membrane protein precursor.
  
 
 0.722
Coch_1505
KEGG: gfo:GFO_3546 hypothetical protein.
  
   0.674
Coch_0227
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_1763 hypothetical protein.
 
     0.567
Coch_0418
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: fjo:Fjoh_1415 PpiC-type peptidyl-prolyl cis- trans isomerase.
  
 
 0.567
Coch_1186
SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_2813 O-antigen polymerase.
 
    0.543
Coch_0226
PFAM: RagB/SusD domain protein; KEGG: bth:BT_1762 hypothetical protein.
  
     0.542
Coch_0482
PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: gfo:GFO_3199 transmembrane peptidase, family M50.
   
    0.538
Coch_0942
KEGG: fjo:Fjoh_1486 hypothetical protein.
       0.531
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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