Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0957KEGG: rxy:Rxyl_3137 hypothetical protein. (411 aa)    
Predicted Functional Partners:
Coch_0432
KEGG: mva:Mvan_5247 hypothetical protein.
  
     0.703
Coch_0706
TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: cli:Clim_0726 addiction module toxin, Txe/YoeB family.
  
     0.659
Coch_1215
Virulence-associated protein D (VapD) conserved region; Cleaves ssRNA, mostly between U:A. Belongs to the VapD ribonuclease family.
  
     0.645
Coch_1209
Virulence-associated protein D (VapD) conserved region; Cleaves ssRNA, mostly between U:A. Belongs to the VapD ribonuclease family.
  
     0.637
Coch_0606
PFAM: Heparinase II/III family protein; KEGG: gme:Gmet_1999 hypothetical protein.
  
     0.596
Coch_0785
PFAM: RagB/SusD domain protein; KEGG: bth:BT_0207 hypothetical protein.
  
     0.468
Coch_1675
KEGG: gfo:GFO_3145 hypothetical protein.
  
     0.433
Coch_0268
PFAM: RagB/SusD domain protein; KEGG: bth:BT_0207 hypothetical protein.
  
     0.426
Coch_1399
PFAM: TM2 domain containing protein; KEGG: ste:STER_0258 hypothetical protein.
 
     0.421
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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