Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0960PFAM: glutamine synthetase catalytic region; KEGG: fjo:Fjoh_2345 glutamine synthetase, catalytic region. (723 aa)    
Predicted Functional Partners:
Coch_0726
Glutamate dehydrogenase (NADP(+)); PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: bfs:BF3437 glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.915
carA
TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: gfo:GFO_2812 carbamoyl phosphate synthase small subunit; Belongs to the CarA family.
  
 
  0.910
Coch_0623
Amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; KEGG: gfo:GFO_3378 amidophosphoribosyltransferase.
    
  0.905
Coch_1886
TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; phosphoribosylglycinamide synthetase; Carbamoyl- phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: fps:FP1988 carbamoyl phosphate synthase large subunit.
  
 
  0.902
glsA
PFAM: Glutaminase, core; KEGG: gfo:GFO_2730 glutaminase; Belongs to the glutaminase family.
     
  0.900
Coch_1100
TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein; KEGG: pdi:BDI_0108 quinol oxidase.
     
  0.900
Coch_1101
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: bth:BT_1417 cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
     
  0.900
glmS
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
     
  0.900
Coch_1569
TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: fps:FP0415 1-pyrroline-5-carboxylate dehydrogenase.
     
  0.900
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
    
 0.810
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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