Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0966KEGG: par:Psyc_1209 hypothetical protein. (327 aa)    
Predicted Functional Partners:
Coch_0965
KEGG: fps:FP1637 hypothetical protein.
 
    
0.838
Coch_0964
PFAM: glycosyl transferase group 1; KEGG: pmf:P9303_01281 hypothetical protein.
  
    0.787
Coch_0967
KEGG: lch:Lcho_1757 hypothetical protein.
  
    0.780
Coch_0270
KEGG: fjo:Fjoh_1257 hypothetical protein.
  
     0.658
Coch_0968
KEGG: gfo:GFO_0145 conserved hypothetical protein, membrane.
       0.558
Coch_0300
KEGG: bth:BT_2504 hypothetical protein.
  
     0.557
Coch_1186
SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_2813 O-antigen polymerase.
 
    0.501
Coch_1488
KEGG: pcr:Pcryo_1454 putative site-specific recombinase.
  
     0.474
Coch_0772
KEGG: vha:VIBHAR_06129 uroporphyrinogen decarboxylase.
  
     0.421
Coch_1549
KEGG: fjo:Fjoh_4940 hypothetical protein.
  
     0.409
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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