Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0968KEGG: gfo:GFO_0145 conserved hypothetical protein, membrane. (1103 aa)    
Predicted Functional Partners:
Coch_0313
KEGG: fjo:Fjoh_1847 hypothetical protein.
  
     0.755
Coch_1795
KEGG: fjo:Fjoh_2424 hypothetical protein.
  
     0.749
Coch_0509
KEGG: fjo:Fjoh_0663 hypothetical protein.
  
     0.745
Coch_1357
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: fps:FP2096 outer membrane protein precursor.
  
     0.728
Coch_1564
Hypothetical protein; KEGG: gfo:GFO_0804 conserved hypothetical protein, secreted.
  
     0.702
Coch_0326
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_0213 TPR repeat-containing protein.
  
     0.697
yidC
60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
     0.677
Coch_1581
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: fjo:Fjoh_1949 PpiC-type peptidyl-prolyl cis- trans isomerase.
  
     0.656
Coch_0554
PFAM: PASTA domain containing protein; KEGG: fps:FP0652 hypothetical protein.
  
     0.632
Coch_0306
PFAM: UbiA prenyltransferase; KEGG: gfo:GFO_3628 prenyltransferase family protein.
 
     0.630
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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