STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Coch_0986PFAM: glycosyl transferase group 1; KEGG: aps:CFPG_506 putative glycogen synthase. (429 aa)    
Predicted Functional Partners:
Coch_0990
PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sat:SYN_02257 1,4-alpha-glucan branching enzyme.
  0.989
Coch_1285
Alpha-glucan phosphorylase; KEGG: sat:SYN_00879 glycogen synthase/glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycogen synthase; glycosyl transferase family 35.
 
 0.979
Coch_0985
Alpha-amylase; PFAM: glycoside hydrolase family 57; polysaccharide deacetylase; KEGG: pdi:BDI_0210 alpha-glycosidase.
 
    0.946
Coch_0988
PFAM: Amylo-alpha-16-glucosidase; KEGG: bvu:BVU_2774 hypothetical protein.
 
 
 0.925
Coch_1506
PFAM: Starch synthase catalytic domain protein; KEGG: gfo:GFO_3545 glycogen synthase N-terminal domain-like protein.
     
 0.900
Coch_0710
TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: yps:YPTB0999 glucose-1-phosphate cytidylyltransferase.
  
 0.836
Coch_0987
Hypothetical protein.
       0.605
Coch_1900
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: fjo:Fjoh_2593 alpha amylase, catalytic region.
  
  0.485
Coch_1111
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: fps:FP1286 FnlB protein involved in UDP-L- FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis).
  
  
 0.465
Coch_0989
KEGG: fjo:Fjoh_0085 hypothetical protein.
       0.455
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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