Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
Coch_1002KEGG: fjo:Fjoh_0548 hypothetical protein. (319 aa)    
Predicted Functional Partners:
Coch_1512
KEGG: gfo:GFO_1471 hypothetical protein.
 
 
 0.838
queE
Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
  
     0.637
Coch_1868
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: gfo:GFO_3625 arginine decarboxylase.
  
     0.487
Coch_1000
Hypothetical protein.
       0.467
Coch_1001
PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: dge:Dgeo_2078 chaperone DnaJ-like protein.
       0.467
Coch_1769
KEGG: gfo:GFO_3422 hypothetical protein.
  
     0.459
Coch_1557
TIGRFAM: ribosomal subunit interface protein; KEGG: fjo:Fjoh_1935 putative sigma 54 modulation protein/ribosomal protein S30EA.
  
     0.414
Coch_2135
KEGG: gfo:GFO_1635 hypothetical protein.
  
     0.404
Coch_0337
PFAM: aminotransferase class-III; KEGG: fjo:Fjoh_2591 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.402
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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