Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Coch_1006 | Coch_1007 | Coch_1006 | Coch_1007 | PFAM: Peptidase M23; KEGG: gfo:GFO_0229 peptidase, family M23. | PFAM: Protein of unknown function DUF695; protein of unknown function DUF1260; KEGG: fnu:FN0296 putative cytoplasmic protein. | 0.651 |
Coch_1006 | Coch_1008 | Coch_1006 | Coch_1008 | PFAM: Peptidase M23; KEGG: gfo:GFO_0229 peptidase, family M23. | Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: gfo:GFO_0228 MerR family transcriptional regulator protein. | 0.686 |
Coch_1006 | tatA-2 | Coch_1006 | Coch_1005 | PFAM: Peptidase M23; KEGG: gfo:GFO_0229 peptidase, family M23. | Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.538 |
Coch_1007 | Coch_1006 | Coch_1007 | Coch_1006 | PFAM: Protein of unknown function DUF695; protein of unknown function DUF1260; KEGG: fnu:FN0296 putative cytoplasmic protein. | PFAM: Peptidase M23; KEGG: gfo:GFO_0229 peptidase, family M23. | 0.651 |
Coch_1007 | Coch_1008 | Coch_1007 | Coch_1008 | PFAM: Protein of unknown function DUF695; protein of unknown function DUF1260; KEGG: fnu:FN0296 putative cytoplasmic protein. | Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: gfo:GFO_0228 MerR family transcriptional regulator protein. | 0.732 |
Coch_1007 | tatA-2 | Coch_1007 | Coch_1005 | PFAM: Protein of unknown function DUF695; protein of unknown function DUF1260; KEGG: fnu:FN0296 putative cytoplasmic protein. | Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.457 |
Coch_1008 | Coch_1006 | Coch_1008 | Coch_1006 | Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: gfo:GFO_0228 MerR family transcriptional regulator protein. | PFAM: Peptidase M23; KEGG: gfo:GFO_0229 peptidase, family M23. | 0.686 |
Coch_1008 | Coch_1007 | Coch_1008 | Coch_1007 | Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: gfo:GFO_0228 MerR family transcriptional regulator protein. | PFAM: Protein of unknown function DUF695; protein of unknown function DUF1260; KEGG: fnu:FN0296 putative cytoplasmic protein. | 0.732 |
Coch_1008 | tatA-2 | Coch_1008 | Coch_1005 | Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: gfo:GFO_0228 MerR family transcriptional regulator protein. | Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.436 |
tatA-2 | Coch_1006 | Coch_1005 | Coch_1006 | Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | PFAM: Peptidase M23; KEGG: gfo:GFO_0229 peptidase, family M23. | 0.538 |
tatA-2 | Coch_1007 | Coch_1005 | Coch_1007 | Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | PFAM: Protein of unknown function DUF695; protein of unknown function DUF1260; KEGG: fnu:FN0296 putative cytoplasmic protein. | 0.457 |
tatA-2 | Coch_1008 | Coch_1005 | Coch_1008 | Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: gfo:GFO_0228 MerR family transcriptional regulator protein. | 0.436 |