Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1013KEGG: hau:Haur_0889 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (470 aa)    
Predicted Functional Partners:
Coch_0606
PFAM: Heparinase II/III family protein; KEGG: gme:Gmet_1999 hypothetical protein.
  
     0.724
Coch_1012
PFAM: glycoside hydrolase family 3 domain protein; KEGG: pdi:BDI_3068 beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
     
 0.664
Coch_0942
KEGG: fjo:Fjoh_1486 hypothetical protein.
   
 
 0.627
Coch_1737
KEGG: aha:AHA_2658 hypothetical protein.
   
 
 0.627
Coch_1011
Beta-galactosidase; PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: tpt:Tpet_1559 glycoside hydrolase family protein.
  
  
 0.619
Coch_1014
Hypothetical protein.
       0.536
Coch_1687
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: fjo:Fjoh_0246 peptidoglycan-binding LysM.
   
 
 0.468
Coch_1688
PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: fjo:Fjoh_0245 membrane bound O-acyl transferase, MBOAT family protein; Belongs to the membrane-bound acyltransferase family.
   
 
 0.468
Coch_0518
Cellulase; PFAM: glycoside hydrolase family 6; KEGG: mbb:BCG_0093 putative cellulase celA1 (endoglucanase); Belongs to the glycosyl hydrolase family 6.
  
 
 0.427
Coch_2131
Cellulase; PFAM: glycoside hydrolase family 6; KEGG: msm:MSMEG_6752 endoglucanase A; Belongs to the glycosyl hydrolase family 6.
  
 
 0.427
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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