Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_1018KEGG: bth:BT_3790 hypothetical protein. (518 aa)    
Predicted Functional Partners:
Coch_1017
PFAM: glycoside hydrolase family 16; KEGG: fal:FRAAL6120 hypothetical protein.
       0.674
Coch_1016
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: xca:xccb100_3047 exported beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
    0.647
Coch_1020
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_0364 hypothetical protein.
       0.533
Coch_1019
PFAM: RagB/SusD domain protein; KEGG: bth:BT_2821 hypothetical protein.
  
    0.473
Coch_1021
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1153 hypothetical protein.
  
    0.435
Coch_1022
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_2818 hypothetical protein.
       0.425
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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