Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rsmIUroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (225 aa)    
Predicted Functional Partners:
Coch_1086
KEGG: fps:FP1062 hypothetical protein.
     
 0.816
Coch_1084
PFAM: peptidase M22 glycoprotease; KEGG: gfo:GFO_0202 peptidase, family M22.
       0.635
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: fjo:Fjoh_1610 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.547
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
 
 0.528
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 
 0.516
tadA
CMP/dCMP deaminase zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
    0.510
fda
PFAM: fructose-bisphosphate aldolase class-I; KEGG: fnu:FN0322 fructose-1,6-bisphosphate aldolase.
       0.506
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 
 
 0.504
Coch_0999
Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC).
 
    0.477
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: gfo:GFO_3030 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.466
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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