Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_1099KEGG: bth:BT_1414 hypothetical protein. (464 aa)    
Predicted Functional Partners:
Coch_1100
TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein; KEGG: pdi:BDI_0108 quinol oxidase.
 
   0.841
Coch_1101
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: bth:BT_1417 cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
 
    0.767
Coch_1102
KEGG: pdi:BDI_0110 hypothetical protein.
 
    0.657
Coch_1470
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: fjo:Fjoh_3862 histidine kinase.
  
  
 0.489
Coch_0258
KEGG: fjo:Fjoh_0885 hypothetical protein.
  
     0.467
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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