Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_1100TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein; KEGG: pdi:BDI_0108 quinol oxidase. (205 aa)    
Predicted Functional Partners:
Coch_1101
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: bth:BT_1417 cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
 
 0.998
Coch_0726
Glutamate dehydrogenase (NADP(+)); PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: bfs:BF3437 glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.918
Coch_0960
PFAM: glutamine synthetase catalytic region; KEGG: fjo:Fjoh_2345 glutamine synthetase, catalytic region.
     
  0.900
Coch_1425
KEGG: gfo:GFO_0161 iron-sulfur binding oxidoreductase.
 
 
 0.893
Coch_1102
KEGG: pdi:BDI_0110 hypothetical protein.
 
  
 0.887
Coch_1099
KEGG: bth:BT_1414 hypothetical protein.
 
   0.841
Coch_1103
PFAM: cytochrome c assembly protein; KEGG: pdi:BDI_0111 cytochrome c biogenesis protein CcsA.
 
  
 0.769
Coch_0220
Two component transcriptional regulator, AraC family; PFAM: response regulator receiver; periplasmic binding protein/LacI transcriptional regulator; ATP- binding region ATPase domain protein; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: bvu:BVU_1666 putative two-component system sensor histidine kinase/response regulator, hybrid.
    
 
 0.406
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.