Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1102KEGG: pdi:BDI_0110 hypothetical protein. (404 aa)    
Predicted Functional Partners:
Coch_1103
PFAM: cytochrome c assembly protein; KEGG: pdi:BDI_0111 cytochrome c biogenesis protein CcsA.
 
  
 0.964
Coch_1101
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: bth:BT_1417 cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
 
  
 0.911
Coch_1100
TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein; KEGG: pdi:BDI_0108 quinol oxidase.
 
  
 0.887
Coch_1760
PFAM: cytochrome c assembly protein; KEGG: gfo:GFO_1809 cytochrome c assembly protein family membrane protein.
 
  
 0.741
Coch_1099
KEGG: bth:BT_1414 hypothetical protein.
 
    0.657
Coch_0796
KEGG: bvu:BVU_0280 hypothetical protein.
  
     0.474
Coch_0141
PFAM: peptidase M16 domain protein; KEGG: cts:Ctha_1714 peptidase M16 domain protein; Belongs to the peptidase M16 family.
 
    0.449
Coch_0222
PFAM: major facilitator superfamily MFS_1; Protein of unknown function DUF895, eukaryotic; KEGG: bth:BT_1758 glucose/galactose transporter.
  
     0.410
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
  
  
 0.403
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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