Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1109PFAM: polysaccharide biosynthesis protein CapD; Polysaccharide biosynthesis domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: bfs:BF1909 putative LPS biosynthesis related dehydratase. (341 aa)    
Predicted Functional Partners:
Coch_1111
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: fps:FP1286 FnlB protein involved in UDP-L- FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis).
 
 
 0.997
Coch_1112
UDP-N-acetylglucosamine 2-epimerase; KEGG: fps:FP1285 FnlC protein involved in UDP-L- FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis). UDP-2-acetamino-2,6-dideoxy-L- talose 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.951
Coch_1202
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: bfs:BF1020 putative UDP-glucose-6 dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 
 0.925
Coch_0699
KEGG: nis:NIS_1259 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.919
Coch_1113
PFAM: glycosyl transferase group 1; KEGG: fps:FP1284 L-fucosamine transferase.
 
  
 0.916
Coch_1106
KEGG: gme:Gmet_1330 hypothetical protein.
  
    0.879
Coch_1110
PFAM: WxcM domain protein domain protein; KEGG: fjo:Fjoh_0335 hypothetical protein.
 
  
 0.851
Coch_1104
PFAM: polysaccharide biosynthesis protein; KEGG: apa:APP7_1475 putative O-antigen transporter.
  
  
 0.844
Coch_1108
PFAM: glycosyl transferase group 1; KEGG: cts:Ctha_2145 glycosyl transferase group 1.
  
  
 0.807
Coch_1107
PFAM: glycosyl transferase group 1; KEGG: pdi:BDI_2207 glycosyl transferase family protein.
  
  
 0.797
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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