Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1126KEGG: pdi:BDI_3066 hypothetical protein. (460 aa)    
Predicted Functional Partners:
Coch_1122
PFAM: RagB/SusD domain protein; KEGG: bth:BT_3568 hypothetical protein.
  
    0.744
Coch_1046
Transcriptional regulator, LuxR family; PFAM: Two component regulator three Y domain protein; Pyrrolo-quinoline quinone; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: Pyrrolo-quinoline quinone; regulatory protein LuxR; KEGG: pdi:BDI_3061 hypothetical protein.
 
     0.730
Coch_1127
PFAM: Two component regulator three Y domain protein; Two component regulator propeller; KEGG: fjo:Fjoh_2430 putative periplasmic ligand- binding sensor protein.
 
     0.704
Coch_1121
PFAM: TonB-dependent receptor plug; KEGG: bth:BT_3569 hypothetical protein.
  
    0.689
Coch_2048
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fjo:Fjoh_1565 endonuclease/exonuclease/phosphatase.
 
     0.649
Coch_0444
PFAM: RagB/SusD domain protein; KEGG: bth:BT_3311 hypothetical protein.
  
    0.635
Coch_1344
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1732 SusD/RagB family protein containing tetratricopeptide repeats.
  
     0.576
Coch_0443
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3310 hypothetical protein.
  
     0.543
Coch_1124
PFAM: phospholipase/Carboxylesterase; KEGG: bth:BT_3286 hypothetical protein.
 
     0.524
Coch_1123
Hypothetical protein; KEGG: shn:Shewana3_2086 beta-xylosidase-like protein.
 
     0.511
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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