Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1127PFAM: Two component regulator three Y domain protein; Two component regulator propeller; KEGG: fjo:Fjoh_2430 putative periplasmic ligand- binding sensor protein. (924 aa)    
Predicted Functional Partners:
Coch_1128
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: gfo:GFO_3463 TonB-dependent outer membrane receptor.
  
     0.769
Coch_1129
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_2432 RagB/SusD domain-containing protein.
  
     0.769
Coch_1130
PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: fjo:Fjoh_2433 hypothetical protein.
  
    0.766
Coch_1131
Glucan endo-1,3-beta-D-glucosidase; PFAM: glycoside hydrolase family 16; KEGG: fjo:Fjoh_2434 glycoside hydrolase family protein.
  
     0.747
Coch_1126
KEGG: pdi:BDI_3066 hypothetical protein.
 
     0.704
Coch_1344
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1732 SusD/RagB family protein containing tetratricopeptide repeats.
  
     0.664
Coch_0443
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3310 hypothetical protein.
  
     0.562
Coch_1122
PFAM: RagB/SusD domain protein; KEGG: bth:BT_3568 hypothetical protein.
  
     0.562
Coch_0444
PFAM: RagB/SusD domain protein; KEGG: bth:BT_3311 hypothetical protein.
  
     0.556
Coch_1010
Histidine kinase; PFAM: response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; ATP-binding region ATPase domain protein; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: gfo:GFO_1697 two-component system sensor histidine kinase/response regulator hybrid.
  
   
 0.538
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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