Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1129PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_2432 RagB/SusD domain-containing protein. (493 aa)    
Predicted Functional Partners:
Coch_1128
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: gfo:GFO_3463 TonB-dependent outer membrane receptor.
 
     0.936
Coch_1130
PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: fjo:Fjoh_2433 hypothetical protein.
 
    0.928
Coch_1131
Glucan endo-1,3-beta-D-glucosidase; PFAM: glycoside hydrolase family 16; KEGG: fjo:Fjoh_2434 glycoside hydrolase family protein.
 
     0.893
Coch_1127
PFAM: Two component regulator three Y domain protein; Two component regulator propeller; KEGG: fjo:Fjoh_2430 putative periplasmic ligand- binding sensor protein.
  
     0.769
Coch_0932
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3090 hypothetical protein.
 
 
   0.725
Coch_1473
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: gfo:GFO_1711 TonB-dependent outer membrane receptor.
 
 
   0.699
Coch_0628
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_1558 hypothetical protein.
 
 
   0.685
Coch_1046
Transcriptional regulator, LuxR family; PFAM: Two component regulator three Y domain protein; Pyrrolo-quinoline quinone; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: Pyrrolo-quinoline quinone; regulatory protein LuxR; KEGG: pdi:BDI_3061 hypothetical protein.
  
     0.667
Coch_1343
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3332 hypothetical protein.
  
     0.633
Coch_1022
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_2818 hypothetical protein.
  
 
   0.606
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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