Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_1189KEGG: gfo:GFO_0159 hypothetical protein. (116 aa)    
Predicted Functional Partners:
Coch_0790
KEGG: gfo:GFO_1877 hypothetical protein.
  
     0.764
Coch_1188
KEGG: bth:BT_0493 hypothetical protein.
       0.757
Coch_1062
KEGG: fjo:Fjoh_1140 hypothetical protein.
  
     0.752
Coch_1190
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: fjo:Fjoh_0937 histidine kinase.
 
     0.747
Coch_0951
KEGG: gfo:GFO_0627 conserved hypothetical protein, secreted.
  
     0.731
Coch_1186
SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_2813 O-antigen polymerase.
 
     0.685
Coch_0278
KEGG: gfo:GFO_1098 secreted protein.
  
     0.681
Coch_1191
KEGG: vvy:VVA1278 putative lipoprotein.
       0.656
Coch_1243
KEGG: gfo:GFO_3541 conserved hypothetical protein, secreted.
  
     0.646
Coch_1187
PFAM: phosphoribosyltransferase; KEGG: fjo:Fjoh_4547 phosphoribosyltransferase.
       0.641
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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