Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_1200KEGG: fjo:Fjoh_2421 hypothetical protein. (376 aa)    
Predicted Functional Partners:
Coch_1201
KEGG: gfo:GFO_1792 hypothetical protein.
       0.816
Coch_1199
PFAM: zinc/iron permease; KEGG: fjo:Fjoh_2493 hypothetical protein.
  
    0.777
Coch_1198
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Beta-N-acetylhexosaminidase-like; coagulation factor 5/8 type domain protein; KEGG: fjo:Fjoh_2039 beta-N-acetylhexosaminidase.
       0.689
Coch_1202
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: bfs:BF1020 putative UDP-glucose-6 dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
     
 0.605
Coch_1196
TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: efa:EF0513 hypothetical protein.
       0.583
Coch_1197
Hypothetical protein.
       0.583
Coch_1033
KEGG: fjo:Fjoh_0978 hypothetical protein.
  
     0.480
Coch_1791
KEGG: fjo:Fjoh_3471 hypothetical protein.
  
     0.453
Coch_1824
Hypothetical protein; KEGG: afw:Anae109_2404 acyltransferase family protein.
  
     0.445
Coch_0203
TIGRFAM: conserved repeat domain protein; KEGG: fjo:Fjoh_0979 hypothetical protein.
  
    0.426
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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