Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_1201KEGG: gfo:GFO_1792 hypothetical protein. (314 aa)    
Predicted Functional Partners:
Coch_1200
KEGG: fjo:Fjoh_2421 hypothetical protein.
       0.816
Coch_0278
KEGG: gfo:GFO_1098 secreted protein.
  
     0.773
Coch_1199
PFAM: zinc/iron permease; KEGG: fjo:Fjoh_2493 hypothetical protein.
       0.773
Coch_1243
KEGG: gfo:GFO_3541 conserved hypothetical protein, secreted.
  
     0.773
Coch_1460
KEGG: fps:FP1615 hypothetical protein.
  
     0.773
Coch_0407
KEGG: gfo:GFO_0092 secreted protein.
  
     0.772
Coch_1728
KEGG: gfo:GFO_1569 secreted protein.
  
     0.772
Coch_2120
KEGG: fps:FP2472 hypothetical protein.
  
     0.771
Coch_0608
KEGG: fps:FP0181 hypothetical protein.
  
     0.769
Coch_1960
KEGG: fjo:Fjoh_0103 hypothetical protein.
  
     0.768
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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