Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1202TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: bfs:BF1020 putative UDP-glucose-6 dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (423 aa)    
Predicted Functional Partners:
Coch_0699
KEGG: nis:NIS_1259 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
 
 0.970
Coch_1109
PFAM: polysaccharide biosynthesis protein CapD; Polysaccharide biosynthesis domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: bfs:BF1909 putative LPS biosynthesis related dehydratase.
  
 
 0.925
Coch_1112
UDP-N-acetylglucosamine 2-epimerase; KEGG: fps:FP1285 FnlC protein involved in UDP-L- FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis). UDP-2-acetamino-2,6-dideoxy-L- talose 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase.
  
  
 0.709
Coch_0472
PFAM: lipopolysaccharide biosynthesis protein; KEGG: pdi:BDI_1145 putative protein involved in capsular polysaccharide biosynthesis.
  
  
 0.625
Coch_1200
KEGG: fjo:Fjoh_2421 hypothetical protein.
     
 0.605
Coch_1199
PFAM: zinc/iron permease; KEGG: fjo:Fjoh_2493 hypothetical protein.
       0.603
Coch_1201
KEGG: gfo:GFO_1792 hypothetical protein.
       0.603
Coch_0714
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: fps:FP1278 aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.569
Coch_0401
PFAM: glycosyl transferase family 4; KEGG: chu:CHU_0167 glycosyltransferase/acetylmuramyl pentapeptide phosphotransferase.
 
  
 0.548
Coch_1198
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Beta-N-acetylhexosaminidase-like; coagulation factor 5/8 type domain protein; KEGG: fjo:Fjoh_2039 beta-N-acetylhexosaminidase.
       0.541
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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