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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_1237TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: fjo:Fjoh_1180 FeS assembly protein SufD. (433 aa)    
Predicted Functional Partners:
Coch_1236
KEGG: fps:FP2392 Fe-S assembly ATPase, SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.994
Coch_1838
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.946
Coch_0937
PFAM: protein of unknown function DUF59; KEGG: gfo:GFO_3126 protein containing DUF59.
 
   
 0.650
Coch_0938
PFAM: Fe-S metabolism associated SufE; KEGG: gfo:GFO_3127 protein containing Fe-S metabolism associated domain.
 
 
 0.585
Coch_1235
Hypothetical protein; KEGG: cth:Cthe_3052 YD repeat-containing protein.
       0.577
Coch_0332
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: gfo:GFO_3134 cysteine desulfurase activator complex subunit SufB.
 
   
0.484
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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