Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1241PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: fjo:Fjoh_1191 peptidase M1, membrane alanine aminopeptidase. (620 aa)    
Predicted Functional Partners:
Coch_1240
KEGG: ote:Oter_3032 hypothetical protein.
       0.773
Coch_0833
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: gfo:GFO_3311 LysE type amino acid translocator.
  
    0.684
Coch_1239
KEGG: gfo:GFO_3295 DNA polymerase III subunit delta'.
       0.645
Coch_0437
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: fjo:Fjoh_1190 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
 
  
 0.595
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
   
 
 0.541
Coch_1947
PFAM: helicase domain protein; type III restriction protein res subunit; SMART: helicase domain protein; DEAD-like helicases; KEGG: pmo:Pmob_1535 helicase domain-containing protein.
  
 
 0.505
Coch_0557
KEGG: fjo:Fjoh_3800 hypothetical protein.
  
     0.443
Coch_1238
TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domain protein; fumarate lyase; KEGG: fjo:Fjoh_5015 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
   0.438
Coch_1744
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: fjo:Fjoh_1852 hypothetical protein.
  
 
 
 0.415
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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