Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Coch_1289PFAM: protein of unknown function DUF192; KEGG: tde:TDE0065 hypothetical protein. (155 aa)    
Predicted Functional Partners:
Coch_1287
Hypothetical protein; KEGG: GH24138 gene product from transcript GH24138- RA.
       0.545
Coch_1288
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: fjo:Fjoh_1787 ECF subfamily RNA polymerase sigma-24 factor.
       0.545
Coch_1286
KEGG: fjo:Fjoh_1789 hypothetical protein.
       0.528
Coch_1290
KEGG: bfs:BF0167 hypothetical protein.
       0.471
Coch_1291
KEGG: fjo:Fjoh_1789 hypothetical protein.
       0.471
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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