Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_1397Hypothetical protein. (143 aa)    
Predicted Functional Partners:
Coch_1398
KEGG: sus:Acid_5586 hypothetical protein.
       0.806
Coch_1399
PFAM: TM2 domain containing protein; KEGG: ste:STER_0258 hypothetical protein.
       0.806
Coch_1396
PFAM: peptidase M48 Ste24p; KEGG: glo:Glov_0813 peptidase M48 Ste24p.
       0.786
Coch_1395
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.773
Coch_1392
Oligopeptidase B; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: fjo:Fjoh_2556 oligopeptidase B.
       0.701
Coch_1393
PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: fjo:Fjoh_4428 glycoside hydrolase family protein.
       0.701
Coch_1394
KEGG: fjo:Fjoh_1209 hypothetical protein.
       0.701
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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