Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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[Homology]
Score
Coch_1464KEGG: amu:Amuc_1694 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II. (344 aa)    
Predicted Functional Partners:
Coch_1463
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: ote:Oter_1448 cytochrome bd ubiquinol oxidase subunit I.
 0.999
Coch_0241
KEGG: gfo:GFO_3149 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
     
 0.584
Coch_0240
KEGG: fjo:Fjoh_0675 succinate dehydrogenase/fumarate reductase iron-sulfur subunit.
     
 0.579
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.532
Coch_1425
KEGG: gfo:GFO_0161 iron-sulfur binding oxidoreductase.
  
 
 0.467
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: fjo:Fjoh_1546 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
       0.438
Coch_1461
KEGG: fjo:Fjoh_2111 hypothetical protein.
       0.404
Coch_1462
PFAM: permease YjgP/YjgQ family protein; KEGG: fps:FP1590 hypothetical protein.
       0.404
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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